Genome Wide Association Studies between molecular markers and phenotypes are now routinely run in model and non-model species. However, tools to estimate the probability of association of functional units (e.g. genes) containing multiple markers are not developed for species other than humans. Here we introduce MUGBAS (MUlti species Gene-Based Association Suite), software that estimates the P-value of a gene using information on annotation, single marker GWA results and genotype. The software is species and annotation independent, fast, highly parallelized and ready for high-density marker studies.
Capomaccio, S., Milanesi, M., Bomba, L., Vajana, E., Ajmone Marsan, P., MUGBAS: a species free gene-based programme suite for post-GWAS analysis, <<BIOINFORMATICS>>, 2015; 31 (14): 2380-2381. [doi:10.1093/bioinformatics/btv144] [http://hdl.handle.net/10807/69008]
MUGBAS: a species free gene-based programme suite for post-GWAS analysis
Capomaccio, Stefano;Milanesi, Marco;Bomba, Lorenzo;Vajana, Elia;Ajmone Marsan, Paolo
2015
Abstract
Genome Wide Association Studies between molecular markers and phenotypes are now routinely run in model and non-model species. However, tools to estimate the probability of association of functional units (e.g. genes) containing multiple markers are not developed for species other than humans. Here we introduce MUGBAS (MUlti species Gene-Based Association Suite), software that estimates the P-value of a gene using information on annotation, single marker GWA results and genotype. The software is species and annotation independent, fast, highly parallelized and ready for high-density marker studies.
I documenti in IRIS sono protetti da copyright e tutti i diritti sono riservati, salvo diversa indicazione.
